PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G005700.1
Common NameB456_007G005700, LOC105801725
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 235aa    MW: 27017.1 Da    PI: 6.2538
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G005700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.3e-08151199355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h  +Er RR +iN+++  L++++P +     + +  a +L + ++Y++ Lq
  Gorai.007G005700.1 151 NSHCVAERVRRGKINERLRSLQDIVPGC----YRNMGMAVMLDEIINYVQFLQ 199
                         5899***********************8....466888999999999999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.16E-10146203No hitNo description
SuperFamilySSF474593.14E-16146216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.843148198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-15149209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-5151199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-7154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MADFTFLDID PTMELLNQFP ELKSLNYQSF SPFSTTDNNL FNNKAQKIPT INNWGEEDNN  60
LPGFTHNSVP SVSQPIFTPG NEFHEETHKR KELDFAWETS FWNSSSPHVY ETEINIRNNP  120
GRGKRAKSNG KEEEKPKEVV HVRARRGQAT NSHCVAERVR RGKINERLRS LQDIVPGCYR  180
NMGMAVMLDE IINYVQFLQN QIEFLSMKLT AASACYDFNS DSDDMETMQR RQKG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488427.11e-178PREDICTED: transcription factor BEE 3-like isoform X1
SwissprotQ8GWK71e-51BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A0D2T6R11e-178A0A0D2T6R1_G
STRINGGLYMA09G31580.26e-75(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2820033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.13e-50BR enhanced expression 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]